Gene detail information of Glyur000788s00032587.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58030.41.00E-92RING/U-box superfamily protein
NRXP_007162336.10hypothetical protein PHAVU_001G143400g [Phaseolus vulgaris]
Swissprottr|Q8GUK7|RMA3_ARATH2.00E-25E3 ubiquitin-protein ligase RMA3
trEMBLtr|V7CYG5|V7CYG5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0078811692500+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
EAR motif-containing Proteinsother


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000788s00032587.1PF13923.1zf-C3HC4_21531931.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.009
SRR1783600control12.996
SRR1783602moderate drought stress17.068
SRR1811619moderate drought stress16.834

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.884
DRR006520Root Summer glycyrrhizin high producing strain20.752
DRR006521Root Winter glycyrrhizin high producing strain21.860
DRR006522Root Winter glycyrrhizin high producing strain20.400
DRR006523Root Summer glycyrrhizin low producing strain26.566
DRR006524Root Summer glycyrrhizin low producing strain26.843
DRR006525Leaf Summer glycyrrhizin high producing strain11.917
DRR006526Leaf Summer glycyrrhizin high producing strain11.704

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.659
SRR2868004Drought Stress(Tissue:root)25.271
SRR2967015Control (Tissue:root)32.807

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.245
SRR9715740Leave21.150
SRR9715741Leave18.546
SRR9715739Root43.615
SRR9715742Root30.432
SRR9715743Root33.132

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.074
SRR8749028MeJA induced 9h19.905
SRR8749029MeJA induced 9h17.700
SRR8749030Uninduced15.138
SRR8749031Uninduced14.033
SRR8749032Uninduced20.768

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.655
SRR8400027Control-Root17.876

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved