Gene detail

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Gene detail information of Glyur000790s00021795.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68070.1	2.00E-88	Zinc finger, C3HC4 type (RING finger) family protein
NR	XP_004498249.1	0	PREDICTED: E3 ubiquitin protein ligase RIE1-like [Cicer arietinum]
Swissprot	tr\|Q8GUU2\|RIE1_ARATH	7.00E-161	E3 ubiquitin protein ligase RIE1
trEMBL	tr\|I1KKV7\|I1KKV7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G26470.1}

Sequence

Transcript Sequence

>Glyur000790s00021795.1
CGCACCGTTTTCAACAACCATTTTTCCCCTACTCATCCACCTTTCAACGCAACCCCTCAAGTCTCAACTCAACAACAATCCACAATCCCTTTCTTCTTAAATCACTTAACACACTCCTTCTCTAGTTACGCGCGCTCCCTTGAATCGAATCACTTTATTTTTCAATTTTTATATGCTTTTTCCAAATATCCAAATATCCAATTTCTTCTCGTCAAGGCTTCCTCTCCTTAAGTTTAATAATTTTATCACTTCCTCCTTTTTCGCTTTTAGATTTCAATTATGCAAACGCGCGTTTTGTGTCTCTAGCTCAGCAGCGATGACATCACGAAACTCCACCGCCATGGAGGCGCCTGATCCCCACGCGCCGCTCCTCCGCTCTCGTAACGATGGCGCCCGGGCTCCCTCCCTCGCNCTCCTGCTGGGACGCGCCGCAGGCCGACGTGGACCGTCGGTGCTGGTGCGGGAGACGGCGGCGCGTGAGCTCGAGGAGCGGCGCGCCGACTGGGGCTACTCGAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTGGTGGTCTCGGCGGCGATGCTGGCGTGCACCGTCGACGAGCGCCCGAACACGCCGATCCGGGTCTGGATCGTCGGATACGCGCTGCAGTGCCTCGTGCACGTCGTGCTGGTGTGGCTCGAGTACCGGCGCCGGTGCCGGAGAGATTCACGGCGGCGGAGGCAGATGGAGANCGACGCCGGAAGCAGTGCCGACGGAAACGATAGCGACGACGGCGACGAGAATTCGTCTCGGCCCGGATTCACACAACGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGCTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTTTGCTGTTGTTTGCCCTGTATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTATACTTCCAACATACAGATTTCGAATATTAAGCAATGAGGAAAAATCTAGTGGTGGAGCTGGATCAATGGTTCCCATAGAAACCAGCAGTTGTTACTTGGCAAATGAACGGATACTTTTACCTGAGGANGCGGAATGCTGTATATGCCTCTGTCCATATGAGGATGGAGTAGAGCTCCATGCTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGTAAGTACAATATTCTCAAGGGAAACGAGCAGTTCCCTGACAGAATCAAGATTGCTTCATCTGCTACGGGATATAAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00790	13058	17380	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000790s00021795.1	PF13639.1	zf-RING_2	346	388	7.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.505
SRR1783600	control	22.023
SRR1783602	moderate drought stress	22.533
SRR1811619	moderate drought stress	22.154

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.038
DRR006520	Root Summer glycyrrhizin high producing strain	35.934
DRR006521	Root Winter glycyrrhizin high producing strain	27.029
DRR006522	Root Winter glycyrrhizin high producing strain	26.142
DRR006523	Root Summer glycyrrhizin low producing strain	32.365
DRR006524	Root Summer glycyrrhizin low producing strain	31.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.244
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.867

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	51.508
SRR2868004	Drought Stress(Tissue:root)	60.782
SRR2967015	Control (Tissue:root)	61.560

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	35.223
SRR9715740	Leave	31.647
SRR9715741	Leave	42.973
SRR9715739	Root	55.930
SRR9715742	Root	42.706
SRR9715743	Root	47.358

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.700
SRR8749028	MeJA induced 9h	26.209
SRR8749029	MeJA induced 9h	20.223
SRR8749030	Uninduced	18.207
SRR8749031	Uninduced	14.229
SRR8749032	Uninduced	14.839

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	53.736
SRR8400027	Control-Root	51.947