Gene detail information of Glyur000792s00027613.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75660.1 | 4.00E-165 | 5'-3' exoribonuclease 3 |
| NR | XP_003606089.1 | 0 | 5'-3' exoribonuclease [Medicago truncatula] |
| Swissprot | tr|Q9FQ03|XRN3_ARATH | 0 | 5'-3' exoribonuclease 3 |
| trEMBL | tr|G7JH90|G7JH90_MEDTR | 0 | 5'-3' exoribonuclease {ECO:0000313|EMBL:AES88286.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00792 | 46786 | 52813 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12619 | XRN2, RAT1 | EC:3.1.13.- | Ribosome biogenesis in eukaryotes | map03008 |
| RNA degradation | map03018 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000792s00027613.1 | PF03159.13 | XRN_N | 1 | 239 | 1.70E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.432 |
| SRR1783600 | control | 2.494 |
| SRR1783602 | moderate drought stress | 6.899 |
| SRR1811619 | moderate drought stress | 6.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.037 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.949 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.410 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.524 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.036 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.074 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.138 |
| SRR9715740 | Leave | 1.816 |
| SRR9715741 | Leave | 1.545 |
| SRR9715739 | Root | 0.520 |
| SRR9715742 | Root | 3.064 |
| SRR9715743 | Root | 2.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.722 |
| SRR8400027 | Control-Root | 4.239 |