Gene detail information of Glyur000793s00026496.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02065.1 | 1.00E-57 | squamosa promoter binding protein-like 8 |
| NR | XP_003530168.1 | 1.68E-143 | PREDICTED: squamosa promoter-binding-like protein 8-like [Glycine max] |
| Swissprot | tr|Q8GXL3|SPL8_ARATH | 1.00E-76 | Squamosa promoter-binding-like protein 8 |
| trEMBL | tr|I1JMW0|I1JMW0_SOYBN | 2.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G27180.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00793 | 29621 | 31718 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000793s00026496.1 | PF03110.9 | SBP | 195 | 272 | 3.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.346 |
| SRR1783600 | control | 31.441 |
| SRR1783602 | moderate drought stress | 40.475 |
| SRR1811619 | moderate drought stress | 40.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.363 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.140 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.184 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.180 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.534 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.877 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.082 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 42.967 |
| SRR9715740 | Leave | 36.787 |
| SRR9715741 | Leave | 24.976 |
| SRR9715739 | Root | 36.823 |
| SRR9715742 | Root | 38.452 |
| SRR9715743 | Root | 37.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.053 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.051 |
| SRR8749030 | Uninduced | 0.022 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.701 |
| SRR8400027 | Control-Root | 6.294 |