Gene detail information of Glyur000793s00026497.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43330.12.00E-114Lactate/malate dehydrogenase family protein
NRXP_004510111.19.54E-173PREDICTED: malate dehydrogenase, cytoplasmic-like [Cicer arietinum]
COGYP_692968.16.00E-92malate dehydrogenase [Alcanivorax borkumensis SK2]
Swissprottr|Q08062|MDHC_MAIZE8.00E-167Malate dehydrogenase, cytoplasmic
trEMBLtr|I1LXZ7|I1LXZ7_SOYBN7.00E-171Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007934099144468+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00025MDH1 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270
Proximal tubule bicarbonate reclamationmap04964


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000793s00026497.1PF00056.18Ldh_1_N211012.20E-19
Glyur000793s00026497.1PF02866.13Ldh_1_C1052752.90E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.809
SRR1783600control2.864
SRR1783602moderate drought stress2.084
SRR1811619moderate drought stress2.005

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.961
DRR006520Root Summer glycyrrhizin high producing strain10.369
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain13.189
DRR006524Root Summer glycyrrhizin low producing strain13.631
DRR006525Leaf Summer glycyrrhizin high producing strain3.339
DRR006526Leaf Summer glycyrrhizin high producing strain3.294

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.309
SRR2868004Drought Stress(Tissue:root)18.312
SRR2967015Control (Tissue:root)15.550

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.260
SRR9715740Leave1.114
SRR9715741Leave1.586
SRR9715739Root1.984
SRR9715742Root5.417
SRR9715743Root7.110

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.132

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.257
SRR8400027Control-Root6.953

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved