Gene detail information of Glyur000793s00026510.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49180.1 | 8.00E-28 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004513190.1 | 5.10E-154 | PREDICTED: WD repeat-containing protein 18-like [Cicer arietinum] |
| COG | YP_004050921.1 | 4.00E-09 | wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672] |
| Swissprot | tr|Q9M3B4|RID3_ARATH | 3.00E-34 | Protein ROOT INITIATION DEFECTIVE 3 |
| trEMBL | tr|A0A072TRE5|A0A072TRE5_MEDTR | 3.00E-150 | Transducin/WD-like repeat-protein {ECO:0000313|EMBL:KEH19383.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00793 | 99445 | 100608 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000793s00026510.1 | PF00400.27 | WD40 | 73 | 105 | 3.50E-06 |
| Glyur000793s00026510.1 | PF00400.27 | WD40 | 131 | 167 | 0.002 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.031 |
| SRR1783600 | control | 0.032 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.080 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.405 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.244 |
| SRR2967015 | Control (Tissue:root) | 0.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.082 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.002 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.154 |
| SRR8400027 | Control-Root | 0.076 |