Gene detail information of Glyur000793s00026512.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53490.1 | 1.00E-127 | RING/U-box superfamily protein |
| NR | KEH19376.1 | 0 | zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula] |
| Swissprot | tr|F4HRI2|HEI10_ARATH | 5.00E-160 | E3 ubiquitin-protein ligase CCNB1IP1 homolog |
| trEMBL | tr|A0A072TQC4|A0A072TQC4_MEDTR | 0 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH19376.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00793 | 110379 | 112467 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.752 |
| SRR1783600 | control | 0.787 |
| SRR1783602 | moderate drought stress | 1.740 |
| SRR1811619 | moderate drought stress | 1.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.066 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.988 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.455 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.446 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.341 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.946 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.443 |
| SRR2967015 | Control (Tissue:root) | 1.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.836 |
| SRR9715740 | Leave | 0.522 |
| SRR9715741 | Leave | 0.126 |
| SRR9715739 | Root | 0.209 |
| SRR9715742 | Root | 0.320 |
| SRR9715743 | Root | 0.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.773 |
| SRR8749028 | MeJA induced 9h | 5.213 |
| SRR8749029 | MeJA induced 9h | 5.765 |
| SRR8749030 | Uninduced | 1.941 |
| SRR8749031 | Uninduced | 1.494 |
| SRR8749032 | Uninduced | 0.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.582 |
| SRR8400027 | Control-Root | 1.525 |