Gene detail information of Glyur000797s00025484.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67440.1 | 8.00E-13 | Minichromosome maintenance (MCM2/3/5) family protein |
| NR | XP_004310066.1 | 8.21E-14 | PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Fragaria vesca subsp. vesca] |
| COG | YP_007130736.1 | 2.00E-09 | ribosome biogenesis GTPase RsgA [Stanieria cyanosphaera PCC 7437] |
| trEMBL | tr|I3T596|I3T596_MEDTR | 4.00E-14 | Uncharacterized protein {ECO:0000313|EMBL:AFK47688.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00797 | 4283 | 8008 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06949 | rsgA, engC | EC:3.6.1.- 3.1.3.100 | Thiamine metabolism | map00730 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.103 |
| SRR1783600 | control | 0.784 |
| SRR1783602 | moderate drought stress | 0.482 |
| SRR1811619 | moderate drought stress | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.491 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.401 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.216 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.107 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.093 |
| SRR2967015 | Control (Tissue:root) | 0.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.307 |
| SRR9715740 | Leave | 0.499 |
| SRR9715741 | Leave | 0.218 |
| SRR9715739 | Root | 0.125 |
| SRR9715742 | Root | 0.947 |
| SRR9715743 | Root | 0.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.440 |
| SRR8400027 | Control-Root | 2.517 |