Gene detail information of Glyur000797s00025493.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67460.1 | 4.00E-24 | Minichromosome maintenance (MCM2/3/5) family protein |
| NR | XP_007163746.1 | 2.55E-36 | hypothetical protein PHAVU_001G260800g [Phaseolus vulgaris] |
| COG | YP_007130736.1 | 3.00E-17 | ribosome biogenesis GTPase RsgA [Stanieria cyanosphaera PCC 7437] |
| trEMBL | tr|V7D2J8|V7D2J8_PHAVU | 1.00E-36 | Uncharacterized protein {ECO:0000313|EMBL:ESW35740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00797 | 23382 | 24268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06949 | rsgA, engC | EC:3.6.1.- 3.1.3.100 | Thiamine metabolism | map00730 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.127 |
| SRR1783600 | control | 1.154 |
| SRR1783602 | moderate drought stress | 0.224 |
| SRR1811619 | moderate drought stress | 0.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.092 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.253 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.036 |
| SRR9715740 | Leave | 0.146 |
| SRR9715741 | Leave | 0.147 |
| SRR9715739 | Root | 0.097 |
| SRR9715742 | Root | 0.080 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.603 |
| SRR8400027 | Control-Root | 0.260 |