Gene detail

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Gene detail information of Glyur000797s00025506.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42340.1	1.00E-12	Plant U-Box 15
NR	KEH21470.1	0	ubox-like protein, putative [Medicago truncatula]
COG	YP_001957952.1	2.00E-10	hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|D1FP53\|LIN_MEDTR	1.00E-20	Putative E3 ubiquitin-protein ligase LIN
trEMBL	tr\|A0A072U6K1\|A0A072U6K1_MEDTR	0	Ubox-like protein, putative {ECO:0000313\|EMBL:KEH21470.1}

Sequence

Transcript Sequence

>Glyur000797s00025506.1
ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGAAGCAGAAGAAGATCAGTGACAAGNTCTAGATCTTCCTTCCACTATGGTGCTCCAAGTGAGCCACTTCACTCTTTGGAAGATAGACTTTGCAAATCAAGTGAAAGAATCAAAACACAGAGAACAAACTCTGCTAGTGCTGCCTCAAGACTTCAGATTGGAAGTGCTAAGAACCAGTTGAAGAACGAAAAACAAACCGAGAAGAAATCTTGTAGCATCACAGGTTCAGGCAAGGGAAGTGATTACAATTCATCAGAGTACATGCCAATGCCAAGGTATGAGAGAGTACTTGAGGATGTTTATTCAGACCAAGTGTCTAATGGGAAAAGAGGCAAAGAAAAGTGTTTCAATGAACTTGTGGAAAAGCCAGTGAAGGATTCAANTATGCTTAGAAAAACAAGTGGAAATAGAAAGAACTCATACACTAGATCTAATAGCAAAAGCTTAGAAGAAGATAGCAGGAACAATAAAAATAGCCATCAATCTGCTTCTGATTCTGGTCTTGCTCTCGATGAAGTTGCTGTCCAAGCATTAGTTTCCATTCTAAATGGATATATACAACGTTTCCTAAAGGATGAGGAATTCCGGTCATTGACGCGTCACAATTGTTTCTCCTCCTTGAATTTCATTCAACTGGAGGAAGAAAACAACAACACTGAGACCAAAGTCATTACAAGTCTTGAGCAAGCAATTGAAACCATTGAACAAGCTGCTGAGGAACCTATATCTGCCACTTATCTGAAAAGGGCCACCATGCAGCTCAGCATCATTGCAGGTTTGAGTTTAAATGATCTCAAGTATGGGTATACATATGGGATCCCCAATTACAAGTTGTCAGCTTGTGCTCATCTTTACCTCAGTGTGGTATATTTGATACAGAGAAAGAATAAAGTGTCAGCAAAGCATCTCTTGCAAGTCTTTTGTGATTCACCTTTTCAGGCAAGGACCATATTGTTGCCTGAATTGTGGGAGCATCTGTTTTCTCCACATCTTTCCCATTTGAAGGCATGGTATAACCAAAAGGAAGCTGAAATCCTAGTGGATACACCAAGCAAAACAAGAAGGCTAAAGCTTCTTCAAAAAGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCAGTGTATTACAAAGATTGGCTTACTGAAGGAGCAGAATCTCCAACCATTCCTTCTATTGGCATTCCATCACTATCTGTTTCAAGTACAACAAGTCGAAGGGGAANTTCACTTGGTCATTCTTCAGAGTCTGCTAGCTCCAGTGAACCATTCTCACCACAGCCAATGGTCAGCAAGAAACTATATGATTCTGTCTTCGGTAGCTCTAATAAATCTGGAGTCTGCGAAGTCGAAGATGAAGATAGTAAGGATGAAGATAGCCTAGAAAGTTGTGTGAGGGGCTCTTATGGATCAACTATTGTTAAACAAACATTAATATATGAATCTGAGACTATTAAATTTACAGATCAAAATACTGAAGATTTCACTCCAAGTGTACCAGTTGGTGCATTCCATCCTAAGAAAAGAACTCCAATGACAGCTGCAGAAGAATGGCAAGAAAGGAATCGCAGCAATGCCACAAAAAAATCTTTCTCCACAGAAACCAATTTAAACAACCACATAGTTGATGCTCTACCACATGAAAAAGCANATGAACTTTCCCTCAGAAAGCCAAATAAGATAAGCTCTACTCATGAAGTTGCAGGATCATATTTTCAAAGCGTTCCACAGGAATTTATTTGTCCTCTTACTAGAAATATCTTTGAAGAACCTGTCACCCTAGAGACTGGTCAAACCTTTGAAAGAGAAGCCATCAAGGCATGGTTTGCAAAGGGAAACAGAACATGCCCAGTAACAGGAAATACTTTAGAATGTGTAGCCATGCCATTTACCAACCTTATCTTGAAGCGTCTGATTAATAATTGGAAGTCAGAAAACTTGGATCACCTTCTGGATTTTGCTTCTCAAACAGTGGAAAATTCAAAGTTGAAAAAGAGGGACGAGGCTGCTGTTTTCAAGTTAGAGGGTCTTTTCTCCTCTTTGAAACAAGAGTACAAATCAACGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00797	102385	105517	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function GO:0004842 ubiquitin-protein transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000797s00025506.1	PF04564.10	U-box	591	662	1.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.099
SRR1783600	control	1.150
SRR1783602	moderate drought stress	0.459
SRR1811619	moderate drought stress	0.455

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.153
DRR006520	Root Summer glycyrrhizin high producing strain	0.203
DRR006521	Root Winter glycyrrhizin high producing strain	0.158
DRR006522	Root Winter glycyrrhizin high producing strain	0.149
DRR006523	Root Summer glycyrrhizin low producing strain	0.156
DRR006524	Root Summer glycyrrhizin low producing strain	0.146
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.087
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.044

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.182
SRR2868004	Drought Stress(Tissue:root)	1.876
SRR2967015	Control (Tissue:root)	1.602

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.051
SRR9715740	Leave	0.119
SRR9715741	Leave	0.118
SRR9715739	Root	0.000
SRR9715742	Root	0.332
SRR9715743	Root	0.286

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.678
SRR8749028	MeJA induced 9h	0.271
SRR8749029	MeJA induced 9h	0.510
SRR8749030	Uninduced	0.053
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.488
SRR8400027	Control-Root	3.587