Gene detail information of Glyur000798s00031090.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03680.1 | 6.00E-65 | Duplicated homeodomain-like superfamily protein |
| NR | KHN48185.1 | 0 | Trihelix transcription factor GT-2 [Glycine soja] |
| Swissprot | tr|Q9LZS0|PTL_ARATH | 4.00E-104 | Trihelix transcription factor PTL |
| trEMBL | tr|I1JPY0|I1JPY0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G34960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00798 | 13675 | 18154 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Trihelix |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000798s00031090.1 | PF13837.1 | Myb_DNA-bind_4 | 115 | 191 | 2.50E-11 |
| Glyur000798s00031090.1 | PF13837.1 | Myb_DNA-bind_4 | 365 | 435 | 4.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.399 |
| SRR1783600 | control | 22.447 |
| SRR1783602 | moderate drought stress | 33.220 |
| SRR1811619 | moderate drought stress | 33.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.992 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 54.723 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.546 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.007 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.523 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.616 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.964 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.072 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.586 |
| SRR9715740 | Leave | 1.020 |
| SRR9715741 | Leave | 0.471 |
| SRR9715739 | Root | 0.617 |
| SRR9715742 | Root | 8.289 |
| SRR9715743 | Root | 8.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.134 |
| SRR8400027 | Control-Root | 1.920 |