Gene detail information of Glyur000801s00027034.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39940.1 | 0 | RNI-like superfamily protein |
| NR | XP_004490952.1 | 0 | PREDICTED: coronatine-insensitive protein 1-like [Cicer arietinum] |
| Swissprot | tr|O04197|COI1_ARATH | 0 | Coronatine-insensitive protein 1 |
| trEMBL | tr|V7BBE9|V7BBE9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW13791.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00801 | 17136 | 23519 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.959 |
| SRR1783600 | control | 17.982 |
| SRR1783602 | moderate drought stress | 29.189 |
| SRR1811619 | moderate drought stress | 28.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.440 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.838 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 51.200 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 49.855 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.786 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.966 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 50.770 |
| SRR2868004 | Drought Stress(Tissue:root) | 64.464 |
| SRR2967015 | Control (Tissue:root) | 70.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.513 |
| SRR9715740 | Leave | 25.616 |
| SRR9715741 | Leave | 20.630 |
| SRR9715739 | Root | 32.554 |
| SRR9715742 | Root | 29.918 |
| SRR9715743 | Root | 29.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.048 |
| SRR8749028 | MeJA induced 9h | 5.046 |
| SRR8749029 | MeJA induced 9h | 4.157 |
| SRR8749030 | Uninduced | 1.480 |
| SRR8749031 | Uninduced | 1.009 |
| SRR8749032 | Uninduced | 1.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 45.970 |
| SRR8400027 | Control-Root | 40.004 |