Gene detail information of Glyur000801s00027043.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55780.1 | 1.00E-93 | Glycosyl hydrolase superfamily protein |
| NR | XP_004491054.1 | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Cicer arietinum] |
| Swissprot | tr|Q06915|EA6_ARATH | 3.00E-52 | Probable glucan endo-1,3-beta-glucosidase A6 (Precursor) |
| trEMBL | tr|G7KBV7|G7KBV7_MEDTR | 0 | Glycoside hydrolase family 17 protein {ECO:0000313|EMBL:AES99513.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00801 | 72793 | 73917 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000801s00027043.1 | PF00332.13 | Glyco_hydro_17 | 45 | 346 | 8.50E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.325 |
| SRR1783600 | control | 0.344 |
| SRR1783602 | moderate drought stress | 0.202 |
| SRR1811619 | moderate drought stress | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.113 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.343 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.389 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.258 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.292 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.331 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.527 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.596 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.116 |
| SRR2967015 | Control (Tissue:root) | 2.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.348 |
| SRR9715740 | Leave | 1.380 |
| SRR9715741 | Leave | 1.186 |
| SRR9715739 | Root | 2.274 |
| SRR9715742 | Root | 1.841 |
| SRR9715743 | Root | 1.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.163 |
| SRR8749028 | MeJA induced 9h | 1.122 |
| SRR8749029 | MeJA induced 9h | 1.194 |
| SRR8749030 | Uninduced | 0.638 |
| SRR8749031 | Uninduced | 0.307 |
| SRR8749032 | Uninduced | 0.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.866 |
| SRR8400027 | Control-Root | 2.887 |