Gene detail information of Glyur000801s00027044.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55770.5 | 2.00E-85 | GATA type zinc finger transcription factor family protein |
| NR | AFK39062.1 | 1.06E-125 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9M047|WLI2B_ARATH | 6.00E-108 | LIM domain-containing protein WLIM2b {ECO:0000305} |
| trEMBL | tr|I3T8A1|I3T8A1_LOTJA | 4.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:AFK48743.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00801 | 76526 | 79224 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000801s00027044.1 | PF00412.17 | LIM | 10 | 65 | 5.20E-14 |
| Glyur000801s00027044.1 | PF00412.17 | LIM | 108 | 163 | 2.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.392 |
| SRR1783600 | control | 8.069 |
| SRR1783602 | moderate drought stress | 1.577 |
| SRR1811619 | moderate drought stress | 1.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.767 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.692 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.096 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.339 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.336 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.491 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.141 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.108 |
| SRR2967015 | Control (Tissue:root) | 12.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.291 |
| SRR9715740 | Leave | 0.226 |
| SRR9715741 | Leave | 0.233 |
| SRR9715739 | Root | 8.039 |
| SRR9715742 | Root | 1.167 |
| SRR9715743 | Root | 1.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.032 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.005 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.348 |
| SRR8400027 | Control-Root | 26.689 |