Gene detail information of Glyur000804s00033423.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05490.1 | 0 | chromatin remodeling 31 |
| NR | XP_007140762.1 | 0 | hypothetical protein PHAVU_008G139700g [Phaseolus vulgaris] |
| COG | YP_004643845.1 | 1.00E-25 | hypothetical protein KNP414_05451 [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|F4I8S3|CLSY3_ARATH | 0 | SNF2 domain-containing protein CLASSY 3 |
| trEMBL | tr|V7B8F7|V7B8F7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12756.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00804 | 56401 | 60910 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10875 | RAD54L, RAD54 | EC:3.6.4.- | Homologous recombination | map03440 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000804s00033423.1 | PF00176.18 | SNF2_N | 548 | 876 | 5.30E-24 |
| Glyur000804s00033423.1 | PF00271.26 | Helicase_C | 975 | 1047 | 1.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.021 |
| SRR1783600 | control | 0.021 |
| SRR1783602 | moderate drought stress | 0.011 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.095 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.094 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.147 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.159 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.450 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.452 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.035 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.007 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.018 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.714 |
| SRR8749028 | MeJA induced 9h | 0.818 |
| SRR8749029 | MeJA induced 9h | 0.493 |
| SRR8749030 | Uninduced | 0.574 |
| SRR8749031 | Uninduced | 0.912 |
| SRR8749032 | Uninduced | 0.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.010 |