Gene detail information of Glyur000805s00021372.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G06550.16.00E-164ATP-dependent caseinolytic (Clp) protease/crotonase family protein
NRKEH33555.103-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula]
COGYP_001261155.16.00E-66enoyl-CoA hydratase/isomerase [Sphingomonas wittichii RW1]
Swissprottr|Q9SHJ8|HIBC8_ARATH03-hydroxyisobutyryl-CoA hydrolase-like protein 5
trEMBLtr|A0A072V5U1|A0A072V5U1_MEDTR03-hydroxyisobutyryl-CoA hydrolase-like protein {ECO:0000313|EMBL:KEH33555.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008055890062704+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05605HIBCH EC:3.1.2.4 Carbon metabolism map01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000805s00021372.1PF13766.1ECH_C2313509.00E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.205
SRR1783600control8.409
SRR1783602moderate drought stress8.841
SRR1811619moderate drought stress9.030

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.161
DRR006520Root Summer glycyrrhizin high producing strain12.102
DRR006521Root Winter glycyrrhizin high producing strain2.474
DRR006522Root Winter glycyrrhizin high producing strain2.422
DRR006523Root Summer glycyrrhizin low producing strain8.289
DRR006524Root Summer glycyrrhizin low producing strain7.991
DRR006525Leaf Summer glycyrrhizin high producing strain12.841
DRR006526Leaf Summer glycyrrhizin high producing strain12.373

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.490
SRR2868004Drought Stress(Tissue:root)38.360
SRR2967015Control (Tissue:root)29.442

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.496
SRR9715740Leave16.982
SRR9715741Leave17.731
SRR9715739Root5.937
SRR9715742Root18.071
SRR9715743Root16.450

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.688
SRR8749028MeJA induced 9h6.819
SRR8749029MeJA induced 9h2.246
SRR8749030Uninduced11.425
SRR8749031Uninduced9.137
SRR8749032Uninduced4.842

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root80.751
SRR8400027Control-Root70.623

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved