Gene detail information of Glyur000805s00021382.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04920.10sucrose phosphate synthase 3F
NRXP_007146334.10hypothetical protein PHAVU_006G031700g [Phaseolus vulgaris]
COGYP_007146799.16.00E-135HAD-superfamily hydrolase, subfamily IIB [Cylindrospermum stagnale PCC 7417]
Swissprottr|Q8RY24|SPSA3_ARATH0Probable sucrose-phosphate synthase 3
trEMBLtr|V7BMR5|V7BMR5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW18328.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00805104726110849+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00696E2.4.1.14 EC:2.4.1.14 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005985  sucrose metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0046524  sucrose-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000805s00021382.1PF13579.1Glyco_trans_4_41903875.60E-09
Glyur000805s00021382.1PF00534.15Glycos_transf_14756494.20E-27
Glyur000805s00021382.1PF05116.8S6PP8069966.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.826
SRR1783600control0.709
SRR1783602moderate drought stress1.093
SRR1811619moderate drought stress1.198

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.201
DRR006520Root Summer glycyrrhizin high producing strain2.018
DRR006521Root Winter glycyrrhizin high producing strain1.177
DRR006522Root Winter glycyrrhizin high producing strain1.037
DRR006523Root Summer glycyrrhizin low producing strain2.381
DRR006524Root Summer glycyrrhizin low producing strain2.396
DRR006525Leaf Summer glycyrrhizin high producing strain0.659
DRR006526Leaf Summer glycyrrhizin high producing strain0.666

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.497
SRR2868004Drought Stress(Tissue:root)1.006
SRR2967015Control (Tissue:root)0.576

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.503
SRR9715740Leave0.141
SRR9715741Leave0.411
SRR9715739Root0.141
SRR9715742Root0.434
SRR9715743Root0.390

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.227
SRR8749028MeJA induced 9h0.793
SRR8749029MeJA induced 9h0.623
SRR8749030Uninduced0.358
SRR8749031Uninduced0.193
SRR8749032Uninduced0.346

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.649
SRR8400027Control-Root0.712

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved