Gene detail information of Glyur000809s00030664.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G02360.206-phosphogluconate dehydrogenase family protein
NRXP_003531895.10PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3-like isoform 1 [Glycine max]
COGYP_007156027.106-phosphogluconate dehydrogenase (decarboxylating) [Anabaena cylindrica PCC 7122]
Swissprottr|Q9FWA3|6GPD3_ARATH06-phosphogluconate dehydrogenase, decarboxylating 3
trEMBLtr|I1KWM7|I1KWM7_SOYBN06-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008096122362689+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00033PGD, gnd, gntZ EC:1.1.1.44 1.1.1.343 Carbon metabolism map01200
Pentose phosphate pathwaymap00030
Glutathione metabolismmap00480


Gene Ontology

biological_process

GO:0006098  pentose-phosphate shunt

GO:0055114  oxidation-reduction process


molecular_function

GO:0004616  phosphogluconate dehydrogenase (decarboxylating) activity

GO:0016491  oxidoreductase activity

GO:0050661  NADP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000809s00030664.1PF03446.10NAD_binding_281815.20E-48
Glyur000809s00030664.1PF00393.146PGD1864792.50E-131


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control189.636
SRR1783600control190.749
SRR1783602moderate drought stress118.920
SRR1811619moderate drought stress119.091

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain142.516
DRR006520Root Summer glycyrrhizin high producing strain140.834
DRR006521Root Winter glycyrrhizin high producing strain77.745
DRR006522Root Winter glycyrrhizin high producing strain75.125
DRR006523Root Summer glycyrrhizin low producing strain89.056
DRR006524Root Summer glycyrrhizin low producing strain89.826
DRR006525Leaf Summer glycyrrhizin high producing strain85.973
DRR006526Leaf Summer glycyrrhizin high producing strain85.712

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)478.498
SRR2868004Drought Stress(Tissue:root)491.698
SRR2967015Control (Tissue:root)359.962

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave238.775
SRR9715740Leave163.001
SRR9715741Leave242.555
SRR9715739Root316.143
SRR9715742Root279.630
SRR9715743Root289.771

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h172.061
SRR8749028MeJA induced 9h265.630
SRR8749029MeJA induced 9h157.956
SRR8749030Uninduced514.703
SRR8749031Uninduced500.289
SRR8749032Uninduced246.196

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root324.885
SRR8400027Control-Root297.584

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved