Gene detail information of Glyur000809s00030671.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02380.1 | 2.00E-62 | CONSTANS-like 2 |
| NR | AAX47172.1 | 0 | CONSTANS-LIKE a [Pisum sativum] |
| Swissprot | tr|Q96502|COL2_ARATH | 5.00E-132 | Zinc finger protein CONSTANS-LIKE 2 |
| trEMBL | tr|Q52ZI8|Q52ZI8_PEA | 0 | CONSTANS-LIKE a {ECO:0000313|EMBL:AAX47172.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00809 | 104031 | 106684 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-CO-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000809s00030671.1 | PF00643.19 | zf-B_box | 68 | 113 | 3.70E-07 |
| Glyur000809s00030671.1 | PF06203.9 | CCT | 337 | 380 | 7.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.421 |
| SRR1783600 | control | 0.445 |
| SRR1783602 | moderate drought stress | 1.443 |
| SRR1811619 | moderate drought stress | 1.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.266 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.226 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.814 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.402 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.928 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.100 |
| SRR2967015 | Control (Tissue:root) | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 101.898 |
| SRR9715740 | Leave | 105.129 |
| SRR9715741 | Leave | 115.642 |
| SRR9715739 | Root | 0.270 |
| SRR9715742 | Root | 31.585 |
| SRR9715743 | Root | 25.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.816 |
| SRR8400027 | Control-Root | 5.131 |