Gene detail

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Gene detail information of Glyur000810s00032288.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35710.1	2.00E-91	Protein kinase family protein with leucine-rich repeat domain
NR	KEH21959.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	4.00E-48	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	6.00E-153	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A072TWU0\|A0A072TWU0_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH21959.1}

Sequence

Transcript Sequence

>Glyur000810s00032288.1
ATGGTACTCTCACTACTCTGCCTCTTTCTATTGCCAACCTCACTCAAGTCTATGAGCTTGATGTTTCAAGAAATAACATTACTGGGGATATTAGACCCTCGCTTATTTCCTGATGGAATTGACCAACACAAAACTTGTCTAATTAGCATCAGGAATCTCCTCTTTCAGGATACCCTGTTGGGTGGTCGAATTCCAAATGAAATAGGAAACATCAAAAACTTGACTTTGCTAGCTCTGGATGGTAACAACTTCTATGGGCCTATTCCTCCATCTCTAGGAAACTGTTCACATTTGAGTATTCTCAGAATGCCTCAAAACCGACTTTCTGGTCCAATACCCCCAAGTATTGGCATGTTAAAGAATTTAACTGATGTNCGTTTTTTCATTAACAACTTAAATGGTACAGTGCCACAAGAATTTGGAANNCTATCTTCTTTGGTCGTGCTGCATCTTGCTGAGAACAATTTCNTTGGTGANTTGCCACCACAAGTGTGCAANNGTNGCAAGCTTGTCAATTTCAGTGCAGCCTACAATNGTTTCANTGGCCCAATTCCGGTGAGCCTTAGAGACTGCCCAGCCTTGTATAGAGTTCGACTNGAATACAACCAGCTGAGAGGTTATGCAGATCAANATTTTGGAGTGTATCCCAACCTTACATACATGGACTTCAGCTATAACAGGGTGGAGGGTGNGCTCTCTTCCAAATGGGGTGCTTGCAAAAACTTGCAATCTCTCAAAATGGCTGGGAATTCAGTGAGCGGCAACATTCCAAGTGAGATTTTTGATTTGGACCAACTTCAAGAGCTTGACTTATCCTCCAACCAACTATTAGGAGATATTCCTCCACAGATAGGAAACTCCTCAAACTTGTATAGTTTAAATTTGGGTGGCAATAGACTTTCTGGTAGGANACCTGTAGAAATTGGAAAACTTTCTAGTCTACAGTCTTTAGACTTGTCAATNAACATGTTGTTGGGACCAGTTCCAAATCAGATAGGGGAATGCTCCAACTTGCTAAGTTTGAATTTGAGTAATAATGATTTGAATGCCACAATTCTCCACCAAATTGGAAATCTTGCATCCTTACAAGATTTTTTGGACTTGAGTTACAANTCGCTTTCAGGGGAAATTCCTTTTGATCTTGGTAAGATTCCAAATTTGGTAAACATCTCTCACAACAATCTATCAGGTTCTATTCCTAATTCCCTTTGTAGAATGTTGAGCTCGTCAGCCCTTAACCTCTCCTATAATCATTTAGAGGGCATCGTTCCTGAATGTGGTATATTCAATTCTTCTCATCAGTTGGATTTGAGCAACAACAAGGATTTACGTTGGAATGTCCGATTCTCACTCATTGAACCTGGTGGTGGAAGTAAAATACACAAGGTTGTGATCCCCATTATTGTTGCTTCTTTGGGAGGAGGTCAAGTATTTGCTGTGAAGAAGTTAAAATGTGATGAAGACAACTTGGACACTGAGAGTATAAAAACCTTCCAAAGTGAGGTAGAAGCTATGACAGAAACATGCCATCGAAACATTGTGAAGCTTTATGGATTCTGCAGTGAAGGGATGCACACATTTNTGATTTATGAGTATATGAACAGAGGAAGCTTAGCTGATGTGCTCGCAAATGACACAAAAGCATTAGAACTAGATTGGCATAAGAGGGTTGGTATTGTCAAAGGTGTGGCAAGCGCTCTATCATATATGCATCATGATTGTGCTACACCTTTAATTCATAGAGACATATCAAGCAAGAATGTTTTGTTATCCTCCAATCTTGAAGCTCATGTTTCAGATTTTGGCACTGCAAGGTTTCTGAAGCCTAATTCTCCTACTTGGACATCATTTGAAGGCACATATGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGTAGTGACCGAGAAATGTGATGTGTTTAGCTTTGGTGTTTTGGCATTGGAGGTTCTTACAGGAAAGCACCCTGGTGATCTTGTTTCTTACTTACAAACTTCCAATGAACAAATGACAGATTTCAAAGAGATTTTAGACAAGCGCCTCCCACCTCCTACAAAGAAGAATATCTTGAAGGAATTGCGATTGATTATGAACTTAGCTCTTTCTTGTTTACAAATAAACCCTCAAGCTCGACCAACCATGCGAAGCATAGCTCAGCTGCTTGAAAGGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00810	72556	75429	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000810s00032288.1	PF12799.2	LRR_4	265	301	4.30E-07
Glyur000810s00032288.1	PF00069.20	Pkinase	474	719	2.40E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.550
SRR1783600	control	0.372
SRR1783602	moderate drought stress	0.410
SRR1811619	moderate drought stress	0.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.101
DRR006524	Root Summer glycyrrhizin low producing strain	0.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.282
SRR2868004	Drought Stress(Tissue:root)	0.556
SRR2967015	Control (Tissue:root)	0.538

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.781
SRR9715740	Leave	0.782
SRR9715741	Leave	1.604
SRR9715739	Root	0.113
SRR9715742	Root	0.804
SRR9715743	Root	0.415

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.349
SRR8749028	MeJA induced 9h	0.138
SRR8749029	MeJA induced 9h	0.084
SRR8749030	Uninduced	0.008
SRR8749031	Uninduced	0.014
SRR8749032	Uninduced	0.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.104
SRR8400027	Control-Root	0.869