Gene detail information of Glyur000814s00023374.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G67380.10casein kinase alpha 1
NRXP_007155852.10hypothetical protein PHAVU_003G237100g [Phaseolus vulgaris]
COGYP_001089094.12.00E-15serine/threonine-protein kinase and phosphatase [Clostridium difficile 630]
Swissprottr|Q08467|CSK21_ARATH0Casein kinase II subunit alpha-1 (Precursor)
trEMBLtr|V7CG14|V7CG14_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW27846.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008148636691031-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03097CSNK2A EC:2.7.11.1 Ribosome biogenesis in eukaryotes map03008
Wnt signaling pathwaymap04310
NF-kappa B signaling pathwaymap04064
Mitophagy - yeastmap04139
Adherens junctionmap04520
Circadian rhythm - plantmap04712
Measlesmap05162
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000814s00023374.1PF00069.20Pkinase1023877.50E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control127.889
SRR1783600control128.530
SRR1783602moderate drought stress176.564
SRR1811619moderate drought stress176.266

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain175.403
DRR006520Root Summer glycyrrhizin high producing strain173.893
DRR006521Root Winter glycyrrhizin high producing strain237.374
DRR006522Root Winter glycyrrhizin high producing strain230.974
DRR006523Root Summer glycyrrhizin low producing strain191.930
DRR006524Root Summer glycyrrhizin low producing strain191.444
DRR006525Leaf Summer glycyrrhizin high producing strain87.951
DRR006526Leaf Summer glycyrrhizin high producing strain88.015

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)193.262
SRR2868004Drought Stress(Tissue:root)213.911
SRR2967015Control (Tissue:root)192.297

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave102.542
SRR9715740Leave108.927
SRR9715741Leave118.985
SRR9715739Root81.364
SRR9715742Root113.368
SRR9715743Root112.097

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h167.384
SRR8749028MeJA induced 9h151.647
SRR8749029MeJA induced 9h165.012
SRR8749030Uninduced140.869
SRR8749031Uninduced180.140
SRR8749032Uninduced157.302

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root195.162
SRR8400027Control-Root186.542

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved