Gene detail information of Glyur000815s00035014.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25780.1 | 8.00E-63 | allene oxide cyclase 3 |
| NR | NP_001240078.1 | 1.53E-141 | allene oxide cyclase 3, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9LS01|AOC3_ARATH | 5.00E-84 | Allene oxide cyclase 3, chloroplastic (Precursor) |
| trEMBL | tr|F6KBT4|F6KBT4_SOYBN | 6.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G07490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00815 | 64141 | 66777 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10525 | AOC | EC:5.3.99.6 | alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000815s00035014.1 | PF06351.6 | Allene_ox_cyc | 76 | 250 | 2.00E-104 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 93.995 |
| SRR1783600 | control | 94.695 |
| SRR1783602 | moderate drought stress | 39.841 |
| SRR1811619 | moderate drought stress | 39.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 157.463 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 154.812 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.344 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.288 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 111.038 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 108.771 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.068 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 32.305 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.046 |
| SRR2967015 | Control (Tissue:root) | 69.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 467.711 |
| SRR9715740 | Leave | 304.955 |
| SRR9715741 | Leave | 457.279 |
| SRR9715739 | Root | 95.332 |
| SRR9715742 | Root | 267.064 |
| SRR9715743 | Root | 227.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.324 |
| SRR8749028 | MeJA induced 9h | 31.918 |
| SRR8749029 | MeJA induced 9h | 29.031 |
| SRR8749030 | Uninduced | 77.131 |
| SRR8749031 | Uninduced | 7.109 |
| SRR8749032 | Uninduced | 20.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 84.510 |
| SRR8400027 | Control-Root | 97.163 |