Gene detail information of Glyur000816s00024884.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G15100.13.00E-23RING-H2 finger A2A
NRXP_004497019.13.17E-71PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Cicer arietinum]
Swissprottr|Q9ZT50|RHA2A_ARATH3.00E-30E3 ubiquitin-protein ligase RHA2A
trEMBLtr|G8A269|G8A269_MEDTR4.00E-62Uncharacterized protein {ECO:0000313|EMBL:AFK44714.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008165352053927-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000816s00024884.1PF13639.1zf-RING_2651084.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control706.692
SRR1783600control736.548
SRR1783602moderate drought stress1946.022
SRR1811619moderate drought stress2067.115

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain179.762
DRR006520Root Summer glycyrrhizin high producing strain184.283
DRR006521Root Winter glycyrrhizin high producing strain1930.168
DRR006522Root Winter glycyrrhizin high producing strain1918.574
DRR006523Root Summer glycyrrhizin low producing strain353.549
DRR006524Root Summer glycyrrhizin low producing strain364.470
DRR006525Leaf Summer glycyrrhizin high producing strain78.194
DRR006526Leaf Summer glycyrrhizin high producing strain79.390

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.333
SRR2868004Drought Stress(Tissue:root)70.197
SRR2967015Control (Tissue:root)71.875

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.688
SRR9715740Leave24.322
SRR9715741Leave18.579
SRR9715739Root229.339
SRR9715742Root190.020
SRR9715743Root171.549

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.254
SRR8749028MeJA induced 9h22.981
SRR8749029MeJA induced 9h32.769
SRR8749030Uninduced5.416
SRR8749031Uninduced8.073
SRR8749032Uninduced16.531

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root187.642
SRR8400027Control-Root157.725

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved