Gene detail information of Glyur000816s00024887.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G01130.12.00E-126DEA(D/H)-box RNA helicase family protein
NRXP_004497017.10PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum]
COGNP_274999.12.00E-35ATP-dependent DNA helicase [Neisseria meningitidis MC58]
Swissprottr|O22899|DHX15_ARATH1.00E-36Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|V7BAR3|V7BAR3_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW14977.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008168348192846-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14442DHX36, RHAU EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000816s00024887.2PF00270.24DEAD1312852.80E-07
Glyur000816s00024887.2PF00271.26Helicase_C4385225.10E-12
Glyur000816s00024887.2PF04408.18HA25856751.10E-23
Glyur000816s00024887.2PF00035.20dsrm9109721.70E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.713
SRR1783600control6.726
SRR1783602moderate drought stress8.567
SRR1811619moderate drought stress8.610

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.161
DRR006520Root Summer glycyrrhizin high producing strain8.327
DRR006521Root Winter glycyrrhizin high producing strain6.629
DRR006522Root Winter glycyrrhizin high producing strain6.578
DRR006523Root Summer glycyrrhizin low producing strain11.175
DRR006524Root Summer glycyrrhizin low producing strain11.267
DRR006525Leaf Summer glycyrrhizin high producing strain6.999
DRR006526Leaf Summer glycyrrhizin high producing strain7.080

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.815
SRR2868004Drought Stress(Tissue:root)17.058
SRR2967015Control (Tissue:root)16.452

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.351
SRR9715740Leave8.793
SRR9715741Leave6.414
SRR9715739Root1.453
SRR9715742Root10.067
SRR9715743Root7.492

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.016
SRR8749028MeJA induced 9h14.124
SRR8749029MeJA induced 9h7.160
SRR8749030Uninduced6.409
SRR8749031Uninduced2.501
SRR8749032Uninduced2.315

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.622
SRR8400027Control-Root18.640

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved