Gene detail information of Glyur000817s00031366.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G58770.19.00E-71Undecaprenyl pyrophosphate synthetase family protein
NRXP_003544879.18.22E-138PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Glycine max]
COGYP_007160464.13.00E-68undecaprenyl pyrophosphate synthetase [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q56Y11|DDPS2_ARATH6.00E-105Dehydrodolichyl diphosphate synthase 2
trEMBLtr|I1MBA3|I1MBA3_SOYBN3.00E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008173025536473+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11778DHDDS, RER2, SRT1 EC:2.5.1.87 Terpenoid backbone biosynthesis map00900


Gene Ontology

molecular_function

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000817s00031366.1PF01255.14Prenyltransf1011565.20E-21
Glyur000817s00031366.1PF01255.14Prenyltransf1562874.30E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.305
SRR1783600control0.255
SRR1783602moderate drought stress0.493
SRR1811619moderate drought stress0.491

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.382
DRR006520Root Summer glycyrrhizin high producing strain0.525
DRR006521Root Winter glycyrrhizin high producing strain0.348
DRR006522Root Winter glycyrrhizin high producing strain0.165
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain24.318
DRR006526Leaf Summer glycyrrhizin high producing strain24.212

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.451
SRR2868004Drought Stress(Tissue:root)0.632
SRR2967015Control (Tissue:root)0.564

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave68.189
SRR9715740Leave76.385
SRR9715741Leave73.189
SRR9715739Root0.099
SRR9715742Root0.396
SRR9715743Root0.117

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.415
SRR8749028MeJA induced 9h0.570
SRR8749029MeJA induced 9h1.650
SRR8749030Uninduced0.218
SRR8749031Uninduced0.522
SRR8749032Uninduced1.495

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.589
SRR8400027Control-Root0.390

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved