Gene detail information of Glyur000818s00024588.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G44900.10minichromosome maintenance (MCM2/3/5) family protein
NRXP_003529518.10PREDICTED: DNA replication licensing factor mcm2-like [Glycine max]
COGNP_147033.23.00E-123minichromosome maintenance protein [Aeropyrum pernix K1]
Swissprottr|B8BKI8|MCM2_ORYSI0DNA replication licensing factor MCM2
trEMBLtr|I1KMP8|I1KMP8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G36680.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008183967562268+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02540MCM2 EC:3.6.4.12 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006270  DNA replication initiation


cellular_component

GO:0005634  nucleus

GO:0042555  MCM complex


molecular_function

GO:0003677  DNA binding

GO:0003678  DNA helicase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000818s00024588.1PF12619.3MCM2_N381953.40E-18
Glyur000818s00024588.1PF14551.1MCM_N2213214.60E-11
Glyur000818s00024588.1PF00493.18MCM5238661.20E-141


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.839
SRR1783600control19.022
SRR1783602moderate drought stress9.191
SRR1811619moderate drought stress8.950

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.700
DRR006520Root Summer glycyrrhizin high producing strain15.388
DRR006521Root Winter glycyrrhizin high producing strain4.026
DRR006522Root Winter glycyrrhizin high producing strain3.925
DRR006523Root Summer glycyrrhizin low producing strain7.732
DRR006524Root Summer glycyrrhizin low producing strain7.674
DRR006525Leaf Summer glycyrrhizin high producing strain4.324
DRR006526Leaf Summer glycyrrhizin high producing strain4.690

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.959
SRR2868004Drought Stress(Tissue:root)27.328
SRR2967015Control (Tissue:root)27.140

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.743
SRR9715740Leave6.373
SRR9715741Leave5.714
SRR9715739Root1.759
SRR9715742Root9.322
SRR9715743Root7.699

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.895
SRR8749028MeJA induced 9h23.445
SRR8749029MeJA induced 9h10.425
SRR8749030Uninduced1.291
SRR8749031Uninduced0.895
SRR8749032Uninduced0.536

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.784
SRR8400027Control-Root35.079

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved