Gene detail information of Glyur000818s00024588.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44900.1 | 0 | minichromosome maintenance (MCM2/3/5) family protein |
| NR | XP_003529518.1 | 0 | PREDICTED: DNA replication licensing factor mcm2-like [Glycine max] |
| COG | NP_147033.2 | 3.00E-123 | minichromosome maintenance protein [Aeropyrum pernix K1] |
| Swissprot | tr|B8BKI8|MCM2_ORYSI | 0 | DNA replication licensing factor MCM2 |
| trEMBL | tr|I1KMP8|I1KMP8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G36680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00818 | 39675 | 62268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02540 | MCM2 | EC:3.6.4.12 | DNA replication | map03030 |
| Cell cycle | map04110 | |||
| Cell cycle - yeast | map04111 | |||
| Meiosis - yeast | map04113 |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000818s00024588.3 | PF12619.3 | MCM2_N | 38 | 195 | 3.00E-18 |
| Glyur000818s00024588.3 | PF14551.1 | MCM_N | 221 | 321 | 4.40E-11 |
| Glyur000818s00024588.3 | PF00493.18 | MCM | 478 | 821 | 1.10E-141 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.839 |
| SRR1783600 | control | 19.022 |
| SRR1783602 | moderate drought stress | 9.191 |
| SRR1811619 | moderate drought stress | 8.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.700 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.388 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.026 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.925 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.732 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.674 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 41.959 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.328 |
| SRR2967015 | Control (Tissue:root) | 27.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.743 |
| SRR9715740 | Leave | 6.373 |
| SRR9715741 | Leave | 5.714 |
| SRR9715739 | Root | 1.759 |
| SRR9715742 | Root | 9.322 |
| SRR9715743 | Root | 7.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.895 |
| SRR8749028 | MeJA induced 9h | 23.445 |
| SRR8749029 | MeJA induced 9h | 10.425 |
| SRR8749030 | Uninduced | 1.291 |
| SRR8749031 | Uninduced | 0.895 |
| SRR8749032 | Uninduced | 0.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.784 |
| SRR8400027 | Control-Root | 35.079 |