Gene detail information of Glyur000818s00024597.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16210.1 | 7.00E-104 | enoyl-CoA hydratase/isomerase A |
| NR | NP_001266095.1 | 3.18E-142 | 3-hydroxybutyryl-CoA dehydratase-like [Cicer arietinum] |
| COG | YP_001411846.1 | 7.00E-56 | enoyl-CoA hydratase [Parvibaculum lavamentivorans DS-1] |
| Swissprot | tr|Q9LUQ5|UBC25_ARATH | 7.00E-73 | Probable ubiquitin-conjugating enzyme E2 25 |
| trEMBL | tr|Q9SMK7|Q9SMK7_CICAR | 1.00E-142 | Putative enoyl CoA hydratase {ECO:0000313|EMBL:CAB61740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00818 | 96370 | 100536 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000818s00024597.1 | PF00378.15 | ECH | 13 | 234 | 3.40E-48 |
| Glyur000818s00024597.1 | PF00179.21 | UQ_con | 291 | 412 | 6.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.797 |
| SRR1783600 | control | 5.782 |
| SRR1783602 | moderate drought stress | 6.588 |
| SRR1811619 | moderate drought stress | 6.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.682 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.536 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.632 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.860 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.163 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.959 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.783 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.553 |
| SRR2967015 | Control (Tissue:root) | 17.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.292 |
| SRR9715740 | Leave | 9.035 |
| SRR9715741 | Leave | 10.427 |
| SRR9715739 | Root | 9.742 |
| SRR9715742 | Root | 10.836 |
| SRR9715743 | Root | 8.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.601 |
| SRR8749028 | MeJA induced 9h | 12.231 |
| SRR8749029 | MeJA induced 9h | 6.930 |
| SRR8749030 | Uninduced | 5.706 |
| SRR8749031 | Uninduced | 5.421 |
| SRR8749032 | Uninduced | 10.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.886 |
| SRR8400027 | Control-Root | 8.886 |