Gene detail information of Glyur000823s00027902.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20800.1 | 2.00E-116 | Cell differentiation, Rcd1-like protein |
| NR | XP_004515427.1 | 1.49E-158 | PREDICTED: cell differentiation protein RCD1 homolog [Cicer arietinum] |
| trEMBL | tr|A0A067L3U6|A0A067L3U6_JATCU | 3.00E-154 | Uncharacterized protein {ECO:0000313|EMBL:KDP39170.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00823 | 5365 | 13809 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Rcd1-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000823s00027902.1 | PF04078.8 | Rcd1 | 40 | 300 | 2.20E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.042 |
| SRR1783600 | control | 0.096 |
| SRR1783602 | moderate drought stress | 0.041 |
| SRR1811619 | moderate drought stress | 0.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.008 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.041 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.045 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.065 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.001 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.003 |
| SRR2967015 | Control (Tissue:root) | 0.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.069 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.238 |
| SRR9715742 | Root | 0.103 |
| SRR9715743 | Root | 0.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.069 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.128 |
| SRR8749030 | Uninduced | 0.179 |
| SRR8749031 | Uninduced | 0.132 |
| SRR8749032 | Uninduced | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.105 |
| SRR8400027 | Control-Root | 0.092 |