Gene detail information of Glyur000823s00027909.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26850.1 | 0 | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase |
| NR | XP_004491414.1 | 0 | PREDICTED: GDP-L-galactose phosphorylase 1-like [Cicer arietinum] |
| COG | YP_314743.1 | 2.00E-13 | hypothetical protein Tbd_0985 [Thiobacillus denitrificans ATCC 25259] |
| Swissprot | tr|Q8RWE8|GGAP1_ARATH | 0 | GDP-L-galactose phosphorylase 1 |
| trEMBL | tr|G7K3M6|G7K3M6_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK40896.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00823 | 71672 | 75133 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14190 | VTC2_5 | EC:2.7.7.69 | Ascorbate and aldarate metabolism | map00053 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 68.768 |
| SRR1783600 | control | 68.898 |
| SRR1783602 | moderate drought stress | 57.678 |
| SRR1811619 | moderate drought stress | 57.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 104.704 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 103.637 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.877 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.253 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 165.587 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 166.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 156.078 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 155.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 66.860 |
| SRR2868004 | Drought Stress(Tissue:root) | 85.000 |
| SRR2967015 | Control (Tissue:root) | 87.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 351.915 |
| SRR9715740 | Leave | 867.283 |
| SRR9715741 | Leave | 409.509 |
| SRR9715739 | Root | 251.274 |
| SRR9715742 | Root | 225.118 |
| SRR9715743 | Root | 226.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.703 |
| SRR8749028 | MeJA induced 9h | 4.649 |
| SRR8749029 | MeJA induced 9h | 4.981 |
| SRR8749030 | Uninduced | 3.059 |
| SRR8749031 | Uninduced | 0.496 |
| SRR8749032 | Uninduced | 0.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 122.852 |
| SRR8400027 | Control-Root | 126.245 |