Gene detail information of Glyur000826s00029641.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40770.10zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
NRXP_006575379.10PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Glycine max]
COGNP_343076.13.00E-19hypothetical protein SSO1653 [Sulfolobus solfataricus P2]
Swissprottr|Q9FNI6|SM3L2_ARATH8.00E-36Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBLtr|I1JH54|I1JH54_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G38370.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0082686577105618+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000826s00029641.1PF00176.18SNF2_N2927835.70E-79


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.731
SRR1783600control2.843
SRR1783602moderate drought stress3.856
SRR1811619moderate drought stress3.774

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.471
DRR006520Root Summer glycyrrhizin high producing strain3.825
DRR006521Root Winter glycyrrhizin high producing strain9.666
DRR006522Root Winter glycyrrhizin high producing strain9.368
DRR006523Root Summer glycyrrhizin low producing strain5.418
DRR006524Root Summer glycyrrhizin low producing strain5.481
DRR006525Leaf Summer glycyrrhizin high producing strain5.037
DRR006526Leaf Summer glycyrrhizin high producing strain4.872

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.650
SRR2868004Drought Stress(Tissue:root)8.037
SRR2967015Control (Tissue:root)7.772

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.726
SRR9715740Leave10.448
SRR9715741Leave10.386
SRR9715739Root0.229
SRR9715742Root3.318
SRR9715743Root2.839

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.145
SRR8749028MeJA induced 9h3.883
SRR8749029MeJA induced 9h1.714
SRR8749030Uninduced1.930
SRR8749031Uninduced1.632
SRR8749032Uninduced1.178

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.308
SRR8400027Control-Root4.979

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved