Gene detail information of Glyur000827s00023987.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24020.1 | 0 | NIN like protein 7 |
| NR | XP_003533182.2 | 0 | PREDICTED: protein NLP7-like [Glycine max] |
| Swissprot | tr|Q84TH9|NLP7_ARATH | 0 | Protein NLP7 |
| trEMBL | tr|K7LDR9|K7LDR9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G25230.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00827 | 72442 | 77961 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RWP-RK |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000827s00023987.1 | PF02042.10 | RWP-RK | 557 | 608 | 2.50E-27 |
| Glyur000827s00023987.1 | PF00564.19 | PB1 | 790 | 870 | 4.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.509 |
| SRR1783600 | control | 1.452 |
| SRR1783602 | moderate drought stress | 1.019 |
| SRR1811619 | moderate drought stress | 0.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.562 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.261 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.188 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.275 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.484 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.432 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.325 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.884 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.755 |
| SRR2967015 | Control (Tissue:root) | 7.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.930 |
| SRR9715740 | Leave | 1.513 |
| SRR9715741 | Leave | 1.647 |
| SRR9715739 | Root | 0.525 |
| SRR9715742 | Root | 2.785 |
| SRR9715743 | Root | 2.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.065 |
| SRR8749028 | MeJA induced 9h | 0.025 |
| SRR8749029 | MeJA induced 9h | 0.048 |
| SRR8749030 | Uninduced | 0.012 |
| SRR8749031 | Uninduced | 0.091 |
| SRR8749032 | Uninduced | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.091 |
| SRR8400027 | Control-Root | 5.221 |