Gene detail information of Glyur000828s00035265.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G34940.2 | 4.00E-171 | glucuronidase 3 |
| NR | XP_004488517.1 | 0 | PREDICTED: heparanase-like protein 3-like [Cicer arietinum] |
| Swissprot | tr|Q9FZP1|HPSE3_ARATH | 0 | Heparanase-like protein 3 (Precursor) |
| trEMBL | tr|I1MHW9|I1MHW9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G23550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00828 | 98719 | 102806 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH79 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K07964 | HPSE | EC:3.2.1.166 | Glycosaminoglycan degradation | map00531 |
| Proteoglycans in cancer | map05205 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000828s00035265.1 | PF03662.9 | Glyco_hydro_79n | 34 | 350 | 1.20E-157 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.039 |
| SRR1783600 | control | 7.080 |
| SRR1783602 | moderate drought stress | 2.833 |
| SRR1811619 | moderate drought stress | 2.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.263 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.183 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.315 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.307 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.689 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.388 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.473 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.734 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.566 |
| SRR2967015 | Control (Tissue:root) | 12.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.114 |
| SRR9715740 | Leave | 11.748 |
| SRR9715741 | Leave | 5.321 |
| SRR9715739 | Root | 5.879 |
| SRR9715742 | Root | 9.545 |
| SRR9715743 | Root | 8.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.324 |
| SRR8749028 | MeJA induced 9h | 2.944 |
| SRR8749029 | MeJA induced 9h | 3.554 |
| SRR8749030 | Uninduced | 0.536 |
| SRR8749031 | Uninduced | 0.270 |
| SRR8749032 | Uninduced | 0.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.854 |
| SRR8400027 | Control-Root | 27.697 |