Gene detail information of Glyur000829s00031122.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39280.12.00E-175phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
NRKHN25375.10Putative phenylalanine--tRNA ligase alpha subunit [Glycine soja]
COGYP_687290.12.00E-67phenylalanyl-tRNA synthetase subunit alpha [Methanocella arvoryzae MRE50]
Swissprottr|Q9T034|SYFA_ARATH0Probable phenylalanine--tRNA ligase alpha subunit
trEMBLtr|G7JG63|G7JG63_MEDTR0Phenylalanyl-tRNA synthetase alpha chain, putative {ECO:0000313|EMBL:AES89103.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008295250558374+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01889FARSA, pheS EC:6.1.1.20 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0043039  tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000049  tRNA binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000829s00031122.1PF01409.15tRNA-synt_2d2584241.20E-51
Glyur000829s00031122.1PF01409.15tRNA-synt_2d4324706.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.657
SRR1783600control33.404
SRR1783602moderate drought stress34.810
SRR1811619moderate drought stress34.605

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.076
DRR006520Root Summer glycyrrhizin high producing strain38.995
DRR006521Root Winter glycyrrhizin high producing strain50.115
DRR006522Root Winter glycyrrhizin high producing strain48.669
DRR006523Root Summer glycyrrhizin low producing strain35.571
DRR006524Root Summer glycyrrhizin low producing strain34.694
DRR006525Leaf Summer glycyrrhizin high producing strain18.866
DRR006526Leaf Summer glycyrrhizin high producing strain18.709

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)81.601
SRR2868004Drought Stress(Tissue:root)76.891
SRR2967015Control (Tissue:root)83.953

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.556
SRR9715740Leave43.797
SRR9715741Leave58.228
SRR9715739Root23.774
SRR9715742Root51.264
SRR9715743Root47.905

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h86.611
SRR8749028MeJA induced 9h71.215
SRR8749029MeJA induced 9h71.075
SRR8749030Uninduced74.878
SRR8749031Uninduced60.413
SRR8749032Uninduced77.508

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root75.739
SRR8400027Control-Root67.201

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved