Gene detail information of Glyur000831s00034078.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G50570.22.00E-36Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
NRAGJ83724.10squamosa promoter-binding 16-like protein [Caragana korshinskii]
Swissprottr|Q0J0K1|SPL18_ORYSJ6.00E-44Squamosa promoter-binding-like protein 18
trEMBLtr|R9R669|R9R669_9FABA0Squamosa promoter-binding 16-like protein {ECO:0000313|EMBL:AGJ83724.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00831105650108701+


Gene family

Gene familysubfamily
Transcription Factors FamilySBP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000831s00034078.2PF03110.9SBP851612.00E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.781
SRR1783600control26.736
SRR1783602moderate drought stress33.953
SRR1811619moderate drought stress33.826

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.078
DRR006520Root Summer glycyrrhizin high producing strain29.880
DRR006521Root Winter glycyrrhizin high producing strain3.183
DRR006522Root Winter glycyrrhizin high producing strain3.198
DRR006523Root Summer glycyrrhizin low producing strain7.474
DRR006524Root Summer glycyrrhizin low producing strain7.640
DRR006525Leaf Summer glycyrrhizin high producing strain62.324
DRR006526Leaf Summer glycyrrhizin high producing strain60.944

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.520
SRR2868004Drought Stress(Tissue:root)27.200
SRR2967015Control (Tissue:root)26.338

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.922
SRR9715740Leave20.678
SRR9715741Leave9.443
SRR9715739Root4.964
SRR9715742Root10.628
SRR9715743Root9.952

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.238
SRR8749028MeJA induced 9h3.674
SRR8749029MeJA induced 9h2.563
SRR8749030Uninduced2.260
SRR8749031Uninduced1.960
SRR8749032Uninduced1.469

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.414
SRR8400027Control-Root28.468

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved