Gene detail information of Glyur000833s00030504.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G43860.13.00E-87chlorophyllase 2
NRXP_007145911.12.00E-153hypothetical protein PHAVU_007G278100g [Phaseolus vulgaris]
COGYP_003200998.16.00E-13chlorophyllase [Nakamurella multipartita DSM 44233]
Swissprottr|Q9M7I7|CLH2_ARATH1.00E-114Chlorophyllase-2, chloroplastic (Precursor)
trEMBLtr|V7BLH8|V7BLH8_PHAVU7.00E-154Uncharacterized protein {ECO:0000313|EMBL:ESW17905.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008338839993259+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08099E3.1.1.14 EC:3.1.1.14 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0015996  chlorophyll catabolic process

GO:0016042  lipid catabolic process


molecular_function

GO:0003847  1-alkyl-2-acetylglycerophosphocholine esterase activity

GO:0047746  chlorophyllase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000833s00030504.1PF03403.8PAF-AH_p_II48873.40E-05
Glyur000833s00030504.1PF12740.2Chlorophyllase2892533.60E-75


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.812
SRR1783600control2.008
SRR1783602moderate drought stress1.306
SRR1811619moderate drought stress1.288

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.898
DRR006520Root Summer glycyrrhizin high producing strain2.129
DRR006521Root Winter glycyrrhizin high producing strain1.067
DRR006522Root Winter glycyrrhizin high producing strain1.111
DRR006523Root Summer glycyrrhizin low producing strain0.806
DRR006524Root Summer glycyrrhizin low producing strain0.845
DRR006525Leaf Summer glycyrrhizin high producing strain41.725
DRR006526Leaf Summer glycyrrhizin high producing strain41.526

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.898
SRR2868004Drought Stress(Tissue:root)0.624
SRR2967015Control (Tissue:root)0.606

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.885
SRR9715740Leave23.178
SRR9715741Leave14.604
SRR9715739Root0.043
SRR9715742Root0.406
SRR9715743Root0.902

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.797
SRR8749028MeJA induced 9h0.038
SRR8749029MeJA induced 9h0.294
SRR8749030Uninduced0.000
SRR8749031Uninduced0.081
SRR8749032Uninduced0.060

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.933
SRR8400027Control-Root0.974

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved