Gene detail information of Glyur000834s00025303.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41700.58.00E-80ubiquitin conjugating enzyme 8
NRXP_003589256.11.66E-103Ubiquitin carrier protein [Medicago truncatula]
COGYP_008797956.13.00E-24ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P35131|UBC8_ARATH4.00E-102Ubiquitin-conjugating enzyme E2 8
trEMBLtr|G7I4J0|G7I4J0_MEDTR6.00E-104Ubiquitin-conjugating enzyme E2 {ECO:0000313|EMBL:AES59507.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008343281536581+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06689UBE2D, UBC4, UBC5 EC:2.3.2.23 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000834s00025303.1PF00179.21UQ_con481845.40E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control590.496
SRR1783600control592.357
SRR1783602moderate drought stress473.701
SRR1811619moderate drought stress469.853

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain426.891
DRR006520Root Summer glycyrrhizin high producing strain417.888
DRR006521Root Winter glycyrrhizin high producing strain242.178
DRR006522Root Winter glycyrrhizin high producing strain234.009
DRR006523Root Summer glycyrrhizin low producing strain598.284
DRR006524Root Summer glycyrrhizin low producing strain596.844
DRR006525Leaf Summer glycyrrhizin high producing strain52.011
DRR006526Leaf Summer glycyrrhizin high producing strain50.951

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)208.270
SRR2868004Drought Stress(Tissue:root)231.276
SRR2967015Control (Tissue:root)230.736

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.721
SRR9715740Leave72.536
SRR9715741Leave69.954
SRR9715739Root303.756
SRR9715742Root190.610
SRR9715743Root190.784

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h460.023
SRR8749028MeJA induced 9h280.141
SRR8749029MeJA induced 9h492.407
SRR8749030Uninduced299.711
SRR8749031Uninduced237.484
SRR8749032Uninduced384.908

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root189.285
SRR8400027Control-Root190.776

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved