Gene detail information of Glyur000834s00025311.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40830.33.00E-88RING-H2 finger C1A
NRXP_007145499.12.50E-179hypothetical protein PHAVU_007G243900g [Phaseolus vulgaris]
Swissprottr|Q8LPN7|RNG1L_ARATH6.00E-44E3 ubiquitin-protein ligase RING1-like
trEMBLtr|V7BKB9|V7BKB9_PHAVU9.00E-180Uncharacterized protein {ECO:0000313|EMBL:ESW17495.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008348190982868+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000834s00025311.1PF14369.1zf-RING_36373.00E-11
Glyur000834s00025311.1PF13639.1zf-RING_21872293.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.440
SRR1783600control56.412
SRR1783602moderate drought stress52.721
SRR1811619moderate drought stress52.292

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain80.247
DRR006520Root Summer glycyrrhizin high producing strain79.555
DRR006521Root Winter glycyrrhizin high producing strain81.157
DRR006522Root Winter glycyrrhizin high producing strain79.724
DRR006523Root Summer glycyrrhizin low producing strain82.692
DRR006524Root Summer glycyrrhizin low producing strain83.363
DRR006525Leaf Summer glycyrrhizin high producing strain17.846
DRR006526Leaf Summer glycyrrhizin high producing strain18.218

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.805
SRR2868004Drought Stress(Tissue:root)29.334
SRR2967015Control (Tissue:root)32.020

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.302
SRR9715740Leave14.843
SRR9715741Leave13.824
SRR9715739Root62.543
SRR9715742Root39.218
SRR9715743Root48.795

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.136
SRR8749028MeJA induced 9h25.257
SRR8749029MeJA induced 9h30.274
SRR8749030Uninduced7.430
SRR8749031Uninduced2.083
SRR8749032Uninduced5.006

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.473
SRR8400027Control-Root46.068

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved