Gene detail information of Glyur000841s00026254.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07270.12.00E-161GTP cyclohydrolase I
NRXP_004510246.10PREDICTED: uncharacterized protein LOC101491091 [Cicer arietinum]
COGYP_007109111.13.00E-38GTP cyclohydrolase I [Geitlerinema sp. PCC 7407]
Swissprottr|Q8VYU3|GCH1_SOLLC0GTP cyclohydrolase 1 {ECO:0000305}
trEMBLtr|A0A072TL11|A0A072TL11_MEDTR0GTP cyclohydrolase I 1 {ECO:0000313|EMBL:KEH18122.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008411952423182+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01495GCH1, folE EC:3.5.4.16 Folate biosynthesis map00790


Gene Ontology

biological_process

GO:0046654  tetrahydrofolate biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003934  GTP cyclohydrolase I activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000841s00026254.1PF01227.17GTP_cyclohydroI371904.80E-36
Glyur000841s00026254.1PF01227.17GTP_cyclohydroI2784631.00E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.193
SRR1783600control6.557
SRR1783602moderate drought stress5.258
SRR1811619moderate drought stress4.454

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.237
DRR006520Root Summer glycyrrhizin high producing strain5.153
DRR006521Root Winter glycyrrhizin high producing strain5.433
DRR006522Root Winter glycyrrhizin high producing strain5.348
DRR006523Root Summer glycyrrhizin low producing strain5.796
DRR006524Root Summer glycyrrhizin low producing strain5.456
DRR006525Leaf Summer glycyrrhizin high producing strain12.418
DRR006526Leaf Summer glycyrrhizin high producing strain12.471

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.384
SRR2868004Drought Stress(Tissue:root)19.571
SRR2967015Control (Tissue:root)15.919

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.909
SRR9715740Leave11.698
SRR9715741Leave14.295
SRR9715739Root7.084
SRR9715742Root13.159
SRR9715743Root10.605

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.797
SRR8749028MeJA induced 9h7.315
SRR8749029MeJA induced 9h3.958
SRR8749030Uninduced14.308
SRR8749031Uninduced4.975
SRR8749032Uninduced3.855

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.086
SRR8400027Control-Root13.188

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved