Gene detail information of Glyur000841s00026256.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07270.2 | 3.00E-151 | GTP cyclohydrolase I |
| NR | XP_004510246.1 | 0 | PREDICTED: uncharacterized protein LOC101491091 [Cicer arietinum] |
| COG | YP_006528230.1 | 1.00E-37 | GTP cyclohydrolase I [Melioribacter roseus P3M-2] |
| Swissprot | tr|Q8VYU3|GCH1_SOLLC | 0 | GTP cyclohydrolase 1 {ECO:0000305} |
| trEMBL | tr|K7MG23|K7MG23_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G11090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00841 | 24472 | 26219 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01495 | GCH1, folE | EC:3.5.4.16 | Folate biosynthesis | map00790 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000841s00026256.1 | PF01227.17 | GTP_cyclohydroI | 36 | 189 | 3.40E-35 |
| Glyur000841s00026256.1 | PF01227.17 | GTP_cyclohydroI | 276 | 463 | 5.10E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.253 |
| SRR1783600 | control | 1.270 |
| SRR1783602 | moderate drought stress | 1.344 |
| SRR1811619 | moderate drought stress | 1.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.296 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.077 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.077 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.195 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 211.886 |
| SRR2868004 | Drought Stress(Tissue:root) | 99.235 |
| SRR2967015 | Control (Tissue:root) | 139.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.164 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.036 |
| SRR9715739 | Root | 13.830 |
| SRR9715742 | Root | 14.859 |
| SRR9715743 | Root | 14.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.047 |
| SRR8749029 | MeJA induced 9h | 0.085 |
| SRR8749030 | Uninduced | 0.048 |
| SRR8749031 | Uninduced | 0.507 |
| SRR8749032 | Uninduced | 0.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 87.975 |
| SRR8400027 | Control-Root | 94.186 |