Gene detail information of Glyur000841s00026259.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G62790.13.00E-271-deoxy-D-xylulose 5-phosphate reductoisomerase
NRAEB91529.12.69E-391-deoxy-D-xylulose 5-phosphate reductoisomerase [Glycine max]
COGYP_007070945.13.00E-161-deoxy-D-xylulose 5-phosphate reductoisomerase [Leptolyngbya sp. PCC 7376]
Swissprottr|Q9XFS9|DXR_ARATH4.00E-321-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (Precursor)
trEMBLtr|F4ZZ27|F4ZZ27_SOYBN1.00E-391-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000313|EMBL:AEB91529.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008413421235219-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00099dxr EC:1.1.1.267 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0030604  1-deoxy-D-xylulose-5-phosphate reductoisomerase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000841s00026259.1PF13288.1DXPR_C2613.10E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.321
SRR1783600control0.476
SRR1783602moderate drought stress0.943
SRR1811619moderate drought stress0.712

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.399
DRR006520Root Summer glycyrrhizin high producing strain0.775
DRR006521Root Winter glycyrrhizin high producing strain1.594
DRR006522Root Winter glycyrrhizin high producing strain1.365
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain1.644
DRR006526Leaf Summer glycyrrhizin high producing strain1.586

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.119
SRR2868004Drought Stress(Tissue:root)0.499
SRR2967015Control (Tissue:root)0.530

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.330
SRR9715740Leave3.397
SRR9715741Leave34.305
SRR9715739Root0.054
SRR9715742Root0.322
SRR9715743Root0.575

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.071
SRR8400027Control-Root1.134

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved