Gene detail information of Glyur000841s00026261.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G62790.101-deoxy-D-xylulose 5-phosphate reductoisomerase
NRXP_004510245.10PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Cicer arietinum]
COGYP_007156860.101-deoxy-D-xylulose 5-phosphate reductoisomerase [Anabaena cylindrica PCC 7122]
Swissprottr|Q9XES0|DXR_MENPI01-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (Precursor)
trEMBLtr|Q6EJD0|Q6EJD0_PUEML01-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000313|EMBL:AAQ84168.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008413739742927-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00099dxr EC:1.1.1.267 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0030604  1-deoxy-D-xylulose-5-phosphate reductoisomerase activity

GO:0046872  metal ion binding

GO:0070402  NADPH binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000841s00026261.1PF02670.11DXP_reductoisom782068.50E-48
Glyur000841s00026261.1PF08436.7DXP_redisom_C2203033.30E-34
Glyur000841s00026261.1PF13288.1DXPR_C3354581.60E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.831
SRR1783600control1.822
SRR1783602moderate drought stress2.756
SRR1811619moderate drought stress2.834

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.648
DRR006520Root Summer glycyrrhizin high producing strain2.591
DRR006521Root Winter glycyrrhizin high producing strain4.097
DRR006522Root Winter glycyrrhizin high producing strain4.033
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain1.546
DRR006526Leaf Summer glycyrrhizin high producing strain1.609

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.315
SRR2868004Drought Stress(Tissue:root)1.500
SRR2967015Control (Tissue:root)1.372

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave46.943
SRR9715740Leave6.795
SRR9715741Leave55.569
SRR9715739Root1.364
SRR9715742Root1.996
SRR9715743Root1.703

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.018
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.159
SRR8400027Control-Root4.327

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved