Gene detail information of Glyur000843s00027182.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14420.4 | 3.00E-166 | RING domain ligase2 |
| NR | XP_003524729.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Glycine max] |
| Swissprot | tr|Q9LY87|RGLG2_ARATH | 0 | E3 ubiquitin-protein ligase RGLG2 |
| trEMBL | tr|I1K2M5|I1K2M5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G24230.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00843 | 13063 | 17287 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000843s00027182.1 | PF07002.11 | Copine | 140 | 288 | 9.40E-51 |
| Glyur000843s00027182.1 | PF13920.1 | zf-C3HC4_3 | 436 | 475 | 2.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.894 |
| SRR1783600 | control | 28.959 |
| SRR1783602 | moderate drought stress | 22.044 |
| SRR1811619 | moderate drought stress | 22.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.894 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.893 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.150 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.880 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.741 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.389 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.528 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 64.391 |
| SRR2868004 | Drought Stress(Tissue:root) | 89.759 |
| SRR2967015 | Control (Tissue:root) | 98.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.000 |
| SRR9715740 | Leave | 22.201 |
| SRR9715741 | Leave | 26.739 |
| SRR9715739 | Root | 13.031 |
| SRR9715742 | Root | 24.774 |
| SRR9715743 | Root | 24.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.225 |
| SRR8749028 | MeJA induced 9h | 84.488 |
| SRR8749029 | MeJA induced 9h | 45.777 |
| SRR8749030 | Uninduced | 128.458 |
| SRR8749031 | Uninduced | 244.449 |
| SRR8749032 | Uninduced | 153.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 62.393 |
| SRR8400027 | Control-Root | 62.565 |