Gene detail information of Glyur000844s00023264.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27310.1 | 3.00E-54 | F-box family protein |
| NR | XP_006592770.1 | 3.18E-161 | PREDICTED: F-box protein At2g27310-like [Glycine max] |
| Swissprot | tr|Q9XIN8|FB119_ARATH | 7.00E-89 | F-box protein At2g27310 |
| trEMBL | tr|I1LTX8|I1LTX8_SOYBN | 1.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00844 | 15169 | 16158 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.516 |
| SRR1783600 | control | 0.615 |
| SRR1783602 | moderate drought stress | 2.619 |
| SRR1811619 | moderate drought stress | 2.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.146 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 130.614 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 101.361 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.404 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.861 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.272 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.376 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.022 |
| SRR2967015 | Control (Tissue:root) | 11.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 388.225 |
| SRR9715740 | Leave | 167.912 |
| SRR9715741 | Leave | 585.999 |
| SRR9715739 | Root | 9.007 |
| SRR9715742 | Root | 64.931 |
| SRR9715743 | Root | 54.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.730 |
| SRR8749028 | MeJA induced 9h | 25.013 |
| SRR8749029 | MeJA induced 9h | 15.736 |
| SRR8749030 | Uninduced | 9.025 |
| SRR8749031 | Uninduced | 13.381 |
| SRR8749032 | Uninduced | 12.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.729 |
| SRR8400027 | Control-Root | 5.835 |