Gene detail information of Glyur000844s00023267.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08370.1 | 6.00E-92 | decapping 1 |
| NR | XP_003596866.1 | 0 | mRNA-decapping enzyme-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SJF3|DCP1_ARATH | 2.00E-138 | mRNA-decapping enzyme-like protein |
| trEMBL | tr|G7IHH9|G7IHH9_MEDTR | 0 | mRNA-decapping enzyme-like protein {ECO:0000313|EMBL:AES67117.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00844 | 35080 | 40077 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12611 | DCP1B | EC:3.-.-.- | RNA degradation | map03018 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000844s00023267.1 | PF06058.8 | DCP1 | 13 | 134 | 2.80E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.178 |
| SRR1783600 | control | 58.778 |
| SRR1783602 | moderate drought stress | 97.496 |
| SRR1811619 | moderate drought stress | 97.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.673 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 101.616 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 100.262 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.488 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 77.097 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.360 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.446 |
| SRR2868004 | Drought Stress(Tissue:root) | 43.905 |
| SRR2967015 | Control (Tissue:root) | 47.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.119 |
| SRR9715740 | Leave | 32.291 |
| SRR9715741 | Leave | 36.346 |
| SRR9715739 | Root | 53.297 |
| SRR9715742 | Root | 45.255 |
| SRR9715743 | Root | 46.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.369 |
| SRR8749028 | MeJA induced 9h | 125.595 |
| SRR8749029 | MeJA induced 9h | 102.533 |
| SRR8749030 | Uninduced | 113.862 |
| SRR8749031 | Uninduced | 71.635 |
| SRR8749032 | Uninduced | 95.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 44.773 |
| SRR8400027 | Control-Root | 40.427 |