Gene detail information of Glyur000844s00023269.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27350.2 | 2.00E-125 | OTU-like cysteine protease family protein |
| NR | XP_004487483.1 | 0 | PREDICTED: OTU domain-containing protein 5-like isoform X4 [Cicer arietinum] |
| trEMBL | tr|G7IHG3|G7IHG3_MEDTR | 0 | OTU-like cysteine protease {ECO:0000313|EMBL:AES67101.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00844 | 42204 | 47541 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12655 | OTUD5, DUBA | EC:3.4.19.12 | RIG-I-like receptor signaling pathway | map04622 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000844s00023269.1 | PF02338.14 | OTU | 247 | 357 | 1.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.975 |
| SRR1783600 | control | 9.055 |
| SRR1783602 | moderate drought stress | 14.758 |
| SRR1811619 | moderate drought stress | 14.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.391 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.087 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.509 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.213 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.141 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.284 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.470 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.088 |
| SRR2967015 | Control (Tissue:root) | 34.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.423 |
| SRR9715740 | Leave | 30.795 |
| SRR9715741 | Leave | 35.886 |
| SRR9715739 | Root | 6.253 |
| SRR9715742 | Root | 13.420 |
| SRR9715743 | Root | 10.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.099 |
| SRR8749028 | MeJA induced 9h | 42.718 |
| SRR8749029 | MeJA induced 9h | 35.272 |
| SRR8749030 | Uninduced | 33.897 |
| SRR8749031 | Uninduced | 44.356 |
| SRR8749032 | Uninduced | 36.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 32.410 |
| SRR8400027 | Control-Root | 29.462 |