Gene detail information of Glyur000844s00023272.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10230.13.00E-155lycopene cyclase
NRXP_007150055.10hypothetical protein PHAVU_005G122400g [Phaseolus vulgaris]
COGYP_001520326.12.00E-76lycopene beta cyclase CrtL [Acaryochloris marina MBIC11017]
Swissprottr|Q9SEA0|CCS_CITSI0Capsanthin/capsorubin synthase, chromoplast (Precursor)
trEMBLtr|V7BVQ7|V7BVQ7_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW22049.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008445776959280-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14593CCS1 EC:5.3.99.8 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0016117  carotenoid biosynthetic process


molecular_function

GO:0016705  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000844s00023272.1PF05834.7Lycopene_cycl834781.50E-118


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.044
SRR1783600control2.198
SRR1783602moderate drought stress1.531
SRR1811619moderate drought stress1.497

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.856
DRR006520Root Summer glycyrrhizin high producing strain7.989
DRR006521Root Winter glycyrrhizin high producing strain0.576
DRR006522Root Winter glycyrrhizin high producing strain0.715
DRR006523Root Summer glycyrrhizin low producing strain24.609
DRR006524Root Summer glycyrrhizin low producing strain26.586
DRR006525Leaf Summer glycyrrhizin high producing strain0.087
DRR006526Leaf Summer glycyrrhizin high producing strain0.184

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.790
SRR2868004Drought Stress(Tissue:root)25.303
SRR2967015Control (Tissue:root)15.186

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.441
SRR9715740Leave0.113
SRR9715741Leave0.782
SRR9715739Root0.638
SRR9715742Root2.316
SRR9715743Root2.344

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.673
SRR8749028MeJA induced 9h5.805
SRR8749029MeJA induced 9h2.822
SRR8749030Uninduced4.978
SRR8749031Uninduced2.448
SRR8749032Uninduced3.387

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.610
SRR8400027Control-Root2.064

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved