Gene detail information of Glyur000846s00019247.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19220.1 | 2.00E-96 | auxin response factor 19 |
| NR | XP_004503551.1 | 7.28E-147 | PREDICTED: auxin response factor 19-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q0D9R7|ARFS_ORYSJ | 2.00E-130 | Auxin response factor 19 |
| trEMBL | tr|A0A061GRP5|A0A061GRP5_THECC | 7.00E-146 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00846 | 31147 | 34194 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000846s00019247.1 | PF02362.16 | B3 | 144 | 209 | 3.30E-08 |
| Glyur000846s00019247.1 | PF06507.8 | Auxin_resp | 239 | 298 | 3.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.834 |
| SRR1783600 | control | 7.602 |
| SRR1783602 | moderate drought stress | 9.505 |
| SRR1811619 | moderate drought stress | 9.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.630 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.530 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.590 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.614 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.493 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.384 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.503 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.496 |
| SRR2967015 | Control (Tissue:root) | 23.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.454 |
| SRR9715740 | Leave | 1.960 |
| SRR9715741 | Leave | 3.303 |
| SRR9715739 | Root | 1.417 |
| SRR9715742 | Root | 11.459 |
| SRR9715743 | Root | 9.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.124 |
| SRR8749028 | MeJA induced 9h | 14.120 |
| SRR8749029 | MeJA induced 9h | 3.367 |
| SRR8749030 | Uninduced | 1.958 |
| SRR8749031 | Uninduced | 0.931 |
| SRR8749032 | Uninduced | 1.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.099 |
| SRR8400027 | Control-Root | 22.879 |