Gene detail information of Glyur000846s00019250.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G06990.10RNA helicase, ATP-dependent, SK12/DOB1 protein
NRXP_004503554.10PREDICTED: superkiller viralicidic activity 2-like 2-like [Cicer arietinum]
COGYP_003652425.13.00E-80DSH domain-containing protein [Thermobispora bispora DSM 43833]
Swissprottr|B9DFG3|ISE2_ARATH1.00E-66DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBLtr|K7KRU1|K7KRU1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G36441.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold008465721364735+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12598MTR4, SKIV2L2 EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000846s00019250.1PF00270.24DEAD762221.20E-20
Glyur000846s00019250.1PF00271.26Helicase_C3774531.60E-06
Glyur000846s00019250.1PF13234.1rRNA_proc-arch4686405.60E-48
Glyur000846s00019250.1PF08148.7DSHCT6638421.20E-55


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.576
SRR1783600control10.683
SRR1783602moderate drought stress13.336
SRR1811619moderate drought stress13.270

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.655
DRR006520Root Summer glycyrrhizin high producing strain16.546
DRR006521Root Winter glycyrrhizin high producing strain15.789
DRR006522Root Winter glycyrrhizin high producing strain15.961
DRR006523Root Summer glycyrrhizin low producing strain17.185
DRR006524Root Summer glycyrrhizin low producing strain16.906
DRR006525Leaf Summer glycyrrhizin high producing strain7.589
DRR006526Leaf Summer glycyrrhizin high producing strain7.653

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.335
SRR2868004Drought Stress(Tissue:root)23.973
SRR2967015Control (Tissue:root)28.461

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.259
SRR9715740Leave15.159
SRR9715741Leave16.801
SRR9715739Root3.780
SRR9715742Root22.175
SRR9715743Root19.640

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.986
SRR8749028MeJA induced 9h17.465
SRR8749029MeJA induced 9h12.627
SRR8749030Uninduced6.922
SRR8749031Uninduced4.630
SRR8749032Uninduced5.671

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.434
SRR8400027Control-Root25.611

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved