Gene detail information of Glyur000846s00019252.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G35360.1 | 0 | acetyl Co-enzyme a carboxylase biotin carboxylase subunit |
NR | XP_004503555.1 | 0 | PREDICTED: biotin carboxylase 1, chloroplastic-like [Cicer arietinum] |
COG | YP_001869185.1 | 0 | acetyl-CoA carboxylase biotin carboxylase subunit [Nostoc punctiforme PCC 73102] |
Swissprot | tr|B9HBA8|ACCC1_POPTR | 0 | Biotin carboxylase 1, chloroplastic (Precursor) |
trEMBL | tr|O23960|O23960_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G36450.1} (Precursor) |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00846 | 67483 | 76472 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000846s00019252.1 | PF00289.17 | CPSase_L_chain | 75 | 182 | 1.20E-37 |
Glyur000846s00019252.1 | PF02786.12 | CPSase_L_D2 | 187 | 394 | 2.60E-80 |
Glyur000846s00019252.1 | PF02785.14 | Biotin_carb_C | 408 | 513 | 1.10E-36 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 55.821 |
SRR1783600 | control | 56.035 |
SRR1783602 | moderate drought stress | 46.179 |
SRR1811619 | moderate drought stress | 46.436 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 41.049 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 40.673 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 15.927 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 15.126 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 42.372 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 42.564 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.808 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.541 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 107.735 |
SRR2868004 | Drought Stress(Tissue:root) | 60.094 |
SRR2967015 | Control (Tissue:root) | 60.164 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 36.092 |
SRR9715740 | Leave | 41.592 |
SRR9715741 | Leave | 36.173 |
SRR9715739 | Root | 37.233 |
SRR9715742 | Root | 37.030 |
SRR9715743 | Root | 36.651 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 56.397 |
SRR8749028 | MeJA induced 9h | 39.167 |
SRR8749029 | MeJA induced 9h | 48.433 |
SRR8749030 | Uninduced | 14.951 |
SRR8749031 | Uninduced | 11.870 |
SRR8749032 | Uninduced | 11.960 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 124.749 |
SRR8400027 | Control-Root | 125.487 |